AdvancedInformaticsExercises

Advanced Informatics, Winter 2021

Link to class website.

Week 2 R markdown exercise

Link to Week 2 R markdown repo.

Week 3 R markdown exercise

Link to Week 3 R markdown repo.

Week 4 Snakemake exercise

Link to Week 4 Snakemake repo.

Week 5 plotting exercise

Link to Week 5 plotting repo.

Week 6 data organization exercise

Link to Week 6 data organization repo.

Week 7 alignment exercise

Link to Week 7 data alignment repo.

Week 8 GATK and RNA-seq counts exercise

Link to Week 8 DNA-seq pipeline and RNA-seq counts repo.

Week 9 RNA-seq analysis and ATAC-seq visualization exercise

Link to Week 9 RNA-seq analysis and ATAC-seq visualization repo.

Week 10 class project repo

Link to Week 10 class project repo.